Regarding the title screen - there was an issue we discovered that was causing this (or something similar) to happen, but I was under the impression it was fixed, so a couple of questions to clarify this one:
1) does the screen look like this upon startup, or only after a reset?
2) did you patch the "Namingway Edition with Japanese Title Screen" patch to your ROM, or did you patch the "without title screen" patch, then later patch the "title screen only" patch?
3) how recently did you download Namingway Edition? (the fix was applied to one patch a while ago, but to the other only recently)
My ROM hacking computer is too slow for bsnes, but the fix I worked on should translate properly. This issue occurs because I had originally used "blank" tiles that were only blank when using the proper palette, but under the right (or, wrong) conditions that palette sometimes gets overwritten thus causing this issue. But the fix replaced those conditionally blank tiles with actual blank tiles, so this shouldn't be happening under any circumstances.
If your answers to the questions above don't illuminate the issue for me, I may have to install bsnes on my other computer to see for myself...
Oh, also, I don't see what's wrong with that screenshot where Cecil is bombing the Floateyes...