I'm curious to see what you have that -does- work well in conjunction that's not already included.
Take this with a grain of salt, but here's what I have insofar:
Lenophis: Anchor's Aweigh, Can't Lose For Winning, Fancy Walking all work. Holy Randomness Batman seems to overwrite some stuff in the main patch, so I didn't bother with it.
Assassin17/MasterZED: Most have worked that I've used (which would be most of them that are bugfixes and aren't in here), some aren't compatible. Obviously the text fixes are moot, but anything to do with battle formations will result in the screen looking all helter skelter.
Leet Sketcher: Almost all work. Remember the compat patches though. These should probably be applied last due to that.
Madsiur: All appear to be working (that are applicable, meaning no sign fix, font option, or event commands) including Minimap enhancement. Sound test's allcaps header sticks out but that's it. Dunno how the either version of the sound test works with renaming Cyan's stuff though. Random Offering hasn't been tested.
Novalia Spirit: Not tested yet (er... anyone have a place to download for those fixes? They aren't here or anywhere else I've looked.)
Imzogelmo: Not tested yet, most of the relevant ones are already in TWU one way or another.
Other: As mentioned before, button config restoration is a no-go with the run button. The other Rage Fix patch out there does actually work, as well as Psycho Cyan and Vanish/Doom.