Only one button saves anything. It's the second button down, there is a pop up then you click on the second button down. then it saves a file in a weird format: http://i50.tinypic.com/33tnxfl.jpg
I can't do anything with that file except load it in the STE program. If i open the save file in an emulator it is corrupt. Same thing happens if i overwrite the NES file. How can I save the process and save the changes to the ROM if there is only one save button? all the other buttons only "open" files not "save as.."
Okay, I some how did it. Trial and Error and of course help from you guys, so thank you. I'm not 100% sure how i did it, but i have a good guess. Sadly, I must go to work but I plan on figuring it out and replying here in case anyone else runs into this problem. Thanks for your help guys!!!!!!